RnoALTD0006792-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46407008-46407482:-
Coord C1 exon
chr12:46407312-46407482
Coord A exon
chr12:46407225-46407311
Coord C2 exon
chr12:46407008-46407058
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
3' ss Seq
TGTTCTCTTTTCACTCACAGGCT
3' ss Score
10.51
Exon sequences
Seq C1 exon
GAGTACCAGGCTCAGGTGGAGGAGATGAGGCTGATGATGAATCAGCTGGAAGAGGACCTCGTGTCAGCCCGAAGACGCAGCGATCTCTACGAGTCTGAGCTGAGGGAGTCTCGGCTCGCCGCCGAGGAATTCAAGCGGAAGGCAAACGAATGTCAGCATAAACTGATGAAG
Seq A exon
GTAGTCAGCCACCCTCCAAGAGGGGACCCTGGGGGCACGGCCCCGGATGATCTTCACAAGACACAAGGCCACGCTGGCTTAGCGAGT
Seq C2 exon
GCTAAGGACCTAGGGAAGCCTGAAGTGGGAGAATGTTCCAGACTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-33-21,34-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGGAGATGAGGCTGAT
R:
ACTTCAGGCTTCCCTAGGTCC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]