RnoALTD0006803-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11405346-11406331:+
Coord C1 exon
chr3:11405346-11405497
Coord A exon
chr3:11405498-11405501
Coord C2 exon
chr3:11406262-11406331
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AGTTCTTACTCCCTCTCTAGCTG
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTGAAGACACTTGAAAAAGAGACAGGCAGCCCAGATGAGGACCACTTCATCACCGTGGACGCCGTTGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGATGATGAAGAAGAGGAAGAAGAGATTGAGGCGGAGGAGGAATTCTGCAA
Seq A exon
GCAG
Seq C2 exon
CTGCAGTCAAGAGAAACATCTTCAGAGCAATGGAAGGACTCTGAGACTTACAGCCCCAACACGGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-20-32,21-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGAGGCGGAGGAGGAA
R:
CGTGTTGGGGCTGTAAGTCTC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]