RnoALTD0007212-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14299507-14304807:+
Coord C1 exon
chr3:14299507-14299607
Coord A exon
NA
Coord C2 exon
chr3:14304560-14304807
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TAGCTTGAAAACTCTTACAGGTT
3' ss Score
3.93
Exon sequences
Seq C1 exon
CACAACAAAATGGCTGCGATGCCGCCGGTCGCCTGAGGGGAGGTATCCCAGCGTCTCCGCATCGCCTCTCCCCCTTGGCTGTTCCTTCCGGTGCTGAGGCG
Seq A exon
NA
Seq C2 exon
GTTTTGATGGCCACCTGGTTTTATTCTTGCAATGAAGAAAGGTTCTGAACGAAAGCTCTCCAAAGCAAAGATGCCAGTGTCATCTCATTTTCCTGGGCCATCGTCTCTTAGGTCCAGCATGCGATCTAGGTCACTGTCCCCTTTAATTGGATCTGAGACTCCACCTTTTCATCCTGGTGGACAGTGCCCTGCACAGGCTGAGCTTACAGATGAAAACACCATGCCTTTGGAGTCCCAGCAACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.973
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAAAATGGCTGCGATGC
R:
TGCTTTGGAGAGCTTTCGTTCA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]