RnoALTD0007794-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11685707-11687759:+
Coord C1 exon
chr10:11685707-11685880
Coord A exon
chr10:11685881-11685895
Coord C2 exon
chr10:11687346-11687759
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
ATTCTTATTATTTCTTTTAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
ATGGCCATTTCTCCTTCCCGGATGCCTCAGCCTCCCAATATGATGGGCACCCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTAGGCATGGGGCAGCCCGCAACCCAG
Seq A exon
GCAGGTGTTTCACAG
Seq C2 exon
GGCCAGGTGCCTGGAGGTACACTTCCTAACCCTCTGAACATGCTGGCGCCCCAGACCAGCCAGCTTCCTTGCCCACCAGTGACACAGTCACCTTTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAGCATCCGACACCACCAGGGATGACCCCTCCCCAGCCAGCAGCTCCCACTCAGCCATCCACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGTGCTGCCCAAACACAGAGCACCCCAACAGTGCAGGCAGCAGCACAGGCTCAGGTGACCCCACAGCCTCAGACTCCAGTGCAGCCACCATCTGTGGCCACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-17-16,18-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACAGAACCAGTTTCCA
R:
GAAGTGTACCTCCAGGCACCT
Band lengths:
103-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]