RnoALTD0008314-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17386160-17386737:-
Coord C1 exon
chr12:17386581-17386737
Coord A exon
NA
Coord C2 exon
chr12:17386160-17386309
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
GGCTCATGTCTACCCCACAGGCA
3' ss Score
7.5
Exon sequences
Seq C1 exon
CTCTCAGAACGCTACGGGCCGATGTTCACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTACGAGGTGGTGAGGGAGGCCTTGGTTGGGACTGGGCACGAGCTAGCCGACCGGCCCCCAATCCCCATCTTCCAGCTCATCCAACGAG
Seq A exon
NA
Seq C2 exon
GCATCTTCTTTTCTTCTGGAGTTCACTGGAAGGTGGCTCGCCAGTTCACGGTGCGCACACTGCAGAGCCTGGGTATACGACAGCCACCCATGGTGGGCAAGGTGCTGCAGGAGCTGGTCTGTCTTAAAGGGCAGCTGGACAGCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770-2-2,3-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCTTCCAGCTCATCC
R:
TCGTATACCCAGGCTCTGCAG
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]