RnoALTD0008384-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:14973056-15007857:+
Coord C1 exon
chr3:14973056-14973159
Coord A exon
chr3:14973160-14973292
Coord C2 exon
chr3:15007757-15007857
Length
133 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCC
5' ss Score
5.06
3' ss Seq
CTGCTCCTTGATAGTAGTAGGGC
3' ss Score
-4.59
Exon sequences
Seq C1 exon
AGTCACCCCAAGAAAGGCCGGGCTCCCGGCGCAGCCTTCCCGGCAGCCTGTCAGAGAAAAGCCCCAGCATGGAGCCCTCGGCTGCAACCCCGTTCCGGGTCACG
Seq A exon
GTAACTATCTCTGCGTCACCACCGCCACTGCCACCACCATCACCACCTCGCCCTGCGGGGCTGCTCTGCGACCCCGCACCCCCCTTCCTGGAGCCTCATGGACCGGGAGAGCATCCAGCCTCCCTTGCTCTAG
Seq C2 exon
GGCTTCCTAGGACACTCTGGAGTCCAGCTACTCCCCAGCCCTACAGATAGCACTCTGTTCCAATCTGGATAGCCACGCTGAGTTATAGGCTGTACAGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226-9-10,10-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(3.8=14.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCCCAAGAAAGGCCG
R:
CCTGTACAGCCTATAACTCAGCG
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]