RnoALTD0008737-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22117633-22119697:-
Coord C1 exon
chr3:22119614-22119697
Coord A exon
chr3:22119610-22119613
Coord C2 exon
chr3:22117633-22117673
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
CTCTCACTCTCTTCCCCTAGGCA
3' ss Score
12.47
Exon sequences
Seq C1 exon
TTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGTGATGTCTTTGAGGAGGAGATCAGCATGGGAGAATAT
Seq A exon
GCCG
Seq C2 exon
GCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-43-59,44-59-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=13.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]