RnoALTD0008741-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56015817-56018177:+
Coord C1 exon
chr13:56015817-56015917
Coord A exon
chr13:56015918-56016263
Coord C2 exon
chr13:56018113-56018177
Length
346 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
3' ss Seq
CAAGGTGCTTTTTATTTTAGGGA
3' ss Score
8.19
Exon sequences
Seq C1 exon
GACCGCCGCTCGTATCAGCGCGTCCCGGACGGCGTGCGGGCGTGCGGGCGCGGGGCGACGGCGGCCCCGCAGCGACATGTGACCATGGACCGCAGGACCAG
Seq A exon
GTGAGCGGCGGCGGGGCCAGGTCTCCGCCGTCCCGGGTGCGGCCTGCCCGGTACGGCCCGCTGCGCGGCGGTCGGCGCTAGGCCGCAAAGCCTGCCCGCCGGGCGACCCGGCTTCCCTGGGCCCGGTCGGCCGTGCGCCGCGGCGGCGGGCGGGCGAGCGGGCGGCTCTGCGAGCGGTGGTTAGGAAACCGCTCCCCCGGCGTTAGGATCGTCGTTGCTCCCTTTAGGATGATTTTCCACGGTGGCCTGAGATGCTTTCTGATCCTTTTCCTTCGTTTAAAATGAAAGCGGCGTTTGTTTATGCCGGCGCTGTGTGTGCTGCTTGCAGAGTGGTATATGCGCTAAG
Seq C2 exon
GGAAAATCCAGAAAGAACTTTCGACTTGGTATTAAAAGTGAAGTGTCATGCCTCTGAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063-2-0,3-0,4-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]