RnoALTD0008888-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80848278-80848827:-
Coord C1 exon
chr3:80848811-80848827
Coord A exon
chr3:80848640-80848810
Coord C2 exon
chr3:80848278-80848378
Length
171 bp
Sequences
Splice sites
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
3' ss Seq
TCATTGGCCCTGCCCTGCAGTCA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTGGGTGGACACGGCGA
Seq A exon
GCGGCTGACCCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGATGGTGAACCCTGCAAGCTTGCAGCATCGCGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
Seq C2 exon
TCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAAGTGAGCAGGGTCAGCATGCACGACTACGAGGCTCTCCATTATGACAAGGAGCAGCTCAAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-41-48,42-48,43-48-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]