RnoALTD0009178-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7348066-7348941:-
Coord C1 exon
chr16:7348817-7348941
Coord A exon
chr16:7348765-7348816
Coord C2 exon
chr16:7348066-7348236
Length
52 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCAGCCGTCTTGCTTCCCAGGGC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTTCTCAAGTACACAGCTGGAGAGATCAACTATGGTGGTCGCGTCACTGACGACTGGGACCGACGCTGTGTCATGAACATACTAGAAGACTTCTACAACCCTGCTGTGCTCTCTCCGGAGCACAG
Seq A exon
GTACAGCAAATCCGGCATATACCACCAGATCCCACCCACCTATGACCTCAAT
Seq C2 exon
GGCTACCTCTCCTACATCAAGAGCCTTCCACTCAATGACATGCCTGAGATCTTCGGTCTGCATGACAACGCCAACATCACCTTTGCCCAGAACGAGACGTTTGCCTTATTTGGTGCCATTCTCCAGCTGCAGCCCAAATCCTCCTCCATGGGTGGCCAGAGCCGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-95-92,96-92,97-92-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTACAACCCTGCTGTGC
R:
TCGTTCTGGGCAAAGGTGATG
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]