RnoALTD0009181-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145785275-145786658:-
Coord C1 exon
chr6:145786548-145786658
Coord A exon
chr6:145786518-145786547
Coord C2 exon
chr6:145785275-145785522
Length
30 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AACCGTTGTTTCTGCCACAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
CAATCATGCAGACCATGGCTCGAAAAAATGAGTGGCCACTGGACAGAATGTGTTTGACTATTGATGTCACTAAGAAAACGAAGGAAGATTATGGCCACCCCCCCAGAGAAG
Seq A exon
GTGCATATCTTCATGGGCTCCACCTGGAAG
Seq C2 exon
GTGCCAGGTGGGACATCCAGTCAGGAGCCCTTGTTGATGCCCGTCTTAAGGAGTTAACATCCACGATGCCAGTCATCTTCGCCAAAGCCATACCCGCAGACAGACAAGAAGTTAAGCATGCCTATGAGTGCCCCGTTTACAAAACCAAAGCGAGAGGCCTCACCTACGTGTGGACGTTCAGGCTAAGGAGCAAAGACAGGATAGCTAAGTGGGTCCTGGCAGGTGTAGCTCTACTACTAGAAGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-106-108,107-108-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(11.4=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCCACTGGACAGAATG
R:
AACAAGGGCTCCTGACTGGAT
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]