RnoALTD0009340-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018791 | Dnlz
Description
DNL-type zinc finger [Source:RGD Symbol;Acc:1308635]
Coordinates
chr3:3797552-3798021:-
Coord C1 exon
chr3:3797921-3798021
Coord A exon
NA
Coord C2 exon
chr3:3797552-3797691
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CACCTCTCTAACCCAACTAGGTC
3' ss Score
6.67
Exon sequences
Seq C1 exon
CCTGGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGAGCATGCGGCGGCGCTAGGGCGCGTGAAAGCGGACCACTACCAGCTCGTCTACACCTGCAAG
Seq A exon
NA
Seq C2 exon
GTCTGTGGGACTCGGTCATCCAAGCACATCTCAAAGTTGGCCTATCACCAGGGTGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018791-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.2)
A:
NA
C2:
PF051807=zf-DNL=FE(67.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGCGGACCACTACCAG
R:
GTCTGCGATGATGTGGTGGTT
Band lengths:
144-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]