RnoALTD0009712-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57817710-57820635:+
Coord C1 exon
chr3:57817710-57817810
Coord A exon
NA
Coord C2 exon
chr3:57820519-57820635
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AATGTTGGTGTGCTTTTAAGGTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
GATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAAGCGGAAACGCTTCGGATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCAAAAG
Seq A exon
NA
Seq C2 exon
GTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGGTGTAGTTGTCCAGC
R:
TCCTTTCCTCTTCTTTCCTCTTCT
Band lengths:
205-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]