RnoALTD0010386-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014574 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RGD Symbol;Acc:69265]
Coordinates
chr1:259739955-259788544:+
Coord C1 exon
chr1:259739955-259740055
Coord A exon
chr1:259740056-259740488
Coord C2 exon
chr1:259788417-259788544
Length
433 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TGTTTTGTTTTTGGCTTTAGATT
3' ss Score
9.92
Exon sequences
Seq C1 exon
AAGCCACCACAGCAAGCAGAGGCAGCAAAAACAAAAACACCCAAGACAAACGAGGGAAGAGGAAGAAAACAAAAAGCTGCCCCTTATGGAAGATATAAAGG
Seq A exon
GTAAGACCAGAACTGATTTGATCCGAACCCTTCAGGGGGGAAAAAAGCCCAGACCCAAAGCAAGTACTTGAAAGACGCAAAGGCAAAGCGCCTGAATGAACGCCCACTCTCCCGAGCAAGGCGGAGAAGCTGTGGGAAGCAGACAGAGCTCAGGGTTGCAGTGCTCTAGGGTAGGCTGGAGTCGATGAATATTCATAATTAATTGGTATGCAGATGTGTTTTTTTAAAGCGACAAGTAACTGTTTTTCAATCCTCTTGTACCTAAAGAAGCAGCTGCTTCATCTACAGTCCGGAGTCATCTAGTGTCGGTTTGGGTCCCTGGCTTGCAGATGTTGGGTTCTGCGTGTAGATTTGTTTTGTTCGAATTTCCTGCGTTCTTTCCTGCTGGGACATTAGCAAAGACTCTGCTCCTTCTCTGCGGGGAGTTGGACAG
Seq C2 exon
ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCTCCTCTGTCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCATTGCCAGAAAATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014574-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0115012=GDA1_CD39=PU(1.8=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACCACAGCAAGCAG
R:
TTTTCTGGCAATGGTTTGTTCTGG
Band lengths:
222-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]