RnoALTD0010846-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50192301-50194347:+
Coord C1 exon
chr16:50192301-50192460
Coord A exon
NA
Coord C2 exon
chr16:50194238-50194347
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCATTTCTGTTTTTATTCAGTAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
CTTGCAGCAAAAACGTGTACGTGAACCTGGACATGAAGGGCATGAACTATAACAGTTCTGCCGTGAAGAATGCTCGAGAATGTCAGGAGAGATGCACCAACGATGCCCACTGCCAGTTTTTCACATACGCAACGGGGCATTTTCCCAGTGTGGACCATCG
Seq A exon
NA
Seq C2 exon
TAAAATGTGTCTTTTGAAGTACACCCAAATGGGGACGCCAACTTCAATAACAAAGCTCGACAGTGTGGTATCTGGATTTTCACTGAAGTCCTGTGGGCTTTCGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-7-10,8-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAGAGATGCACCAACG
R:
CGAAAGCCCACAGGACTTCAG
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]