RnoALTD0011679-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004440 | Fignl1
Description
fidgetin-like 1 [Source:RGD Symbol;Acc:1307112]
Coordinates
chr14:91901799-91904485:-
Coord C1 exon
chr14:91904385-91904485
Coord A exon
chr14:91904077-91904384
Coord C2 exon
chr14:91901799-91901914
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CATCTTTATGTTCTGTGCAGCTC
3' ss Score
8.39
Exon sequences
Seq C1 exon
CTCATACGCGCGTGCGCAACGCGGGCCGAGCGCGTCGCCGCGCGCAGGCGCACTTGGAAGGGCGCGCTTTTCGGTGGCTGCTGTCCCGGCAGGGAGCGCAG
Seq A exon
GTGGGCGCCGGTAGGCTGCTTTTCTCCGCTAGGCCGGCGGGTCTAGGCTGTGGTCGCCACGCCGGGCGTTTTCTTTGGTTTTGTTTTGTTCTGTCAGTTCTTAGACTCGGGTTGTCCGAGAGGGTGGCCTTGGGAAGCCCGCGGTGAGGCTCTGCCTCTCGGCGGCGGCTGGGGTTAAGGGACGGCCTTTGGGCGTGACGGTCGGTCAGCCGCAGCTTACCTCCCGCTAGGAGTGTTGGGAAGGCTGGAGCAGGTTTGCCACCTAAACGTACGCATTTTGAGTATCGTGCTTTCGGCAATACTAGCAG
Seq C2 exon
CTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTACCTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAGCAGAGTTCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004440-1-0,2-0,3-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]