RnoALTD0012105-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56883645-56885206:+
Coord C1 exon
chr3:56883645-56883724
Coord A exon
chr3:56883725-56883730
Coord C2 exon
chr3:56885094-56885206
Length
6 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACT
5' ss Score
6.06
3' ss Seq
TCCTTTCGCTGTCACTGCAGGTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGGACCAAAGCATGAGTGTGGCCTCCAGAG
Seq A exon
GTGATG
Seq C2 exon
GTTCACATATGAAATTGCACCCGTGTTTGTTCTTATGGAACAGATTACACTTAAGAAGATGCGAGAGATCATTGGATGGTCAAATAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007-27-11,28-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=PD(7.9=46.2)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGTGTTGGTTGCTACG
R:
ACAAACACGGGTGCAATTTCA
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]