RnoALTD0012608-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21360961-21361891:-
Coord C1 exon
chr16:21361809-21361891
Coord A exon
NA
Coord C2 exon
chr16:21360961-21361048
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGTGA
5' ss Score
-0.79
3' ss Seq
TTATCTTTCCCAACCCCCAGGAC
3' ss Score
10.46
Exon sequences
Seq C1 exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAAC
Seq A exon
NA
Seq C2 exon
GACTTTCGATCCCCTGGCTGGAGACCTTGTACTCAGAGAAGACCTGGAGCCTGACAAGACTGACACAGCTGCAGTGGAGACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257-4-2,5-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGGACAACCTCGAGAT
R:
TGTCAGTCTTGTCAGGCTCCA
Band lengths:
99-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]