RnoALTD0012732-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23352606-23353428:-
Coord C1 exon
chr3:23353328-23353428
Coord A exon
chr3:23353284-23353327
Coord C2 exon
chr3:23352606-23352654
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTATCTTTATTTTCACACAGGGC
3' ss Score
8.89
Exon sequences
Seq C1 exon
TCGGCTCGTCGGCCTGAGGTGGGGGCCGAGAGCCCTCGAGAGTCCGCGGAGGCGTGGCTGCTCTTAGACAGCAAGTGCTCTACTGGAGTCCCTGGACGCAA
Seq A exon
GTAGGCCTCCCTTTCTCCCGTGGCCTCCGGCGGTCTACCGCAAG
Seq C2 exon
GGCAGTGACTTTGACCTCCAGACTGTCTTAAACATAGTAGATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGGCCTGAGGTGG
R:
ATGTTTAAGACAGTCTGGAGGTCA
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]