RnoALTD0012739-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11335418-11335724:+
Coord C1 exon
chr3:11335418-11335520
Coord A exon
chr3:11335521-11335525
Coord C2 exon
chr3:11335618-11335724
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
CCTGCCTGCCGTCCCCACAGGAG
3' ss Score
11.58
Exon sequences
Seq C1 exon
AACCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGCGGGTGGAGGAGCTTGAACATTGCTGTATCCAGCTTTCTGGGGAGACAGACACTATTG
Seq A exon
GTGAG
Seq C2 exon
GAGAGTACATTGCCCTCTACCAAAACCAGAGGGCAGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAGTATATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-35-40,36-40-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCTGGGGAGACAGACA
R:
TTCCTTCTCCAAATGCCGAGC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]