RnoALTD0012894-4/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9704386-9705228:+
Coord C1 exon
chr9:9704386-9704486
Coord A exon
chr9:9704487-9704698
Coord C2 exon
chr9:9705109-9705228
Length
212 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACA
5' ss Score
5.35
3' ss Seq
GCCTCTTTGGTTTCCTGCAGGGG
3' ss Score
11.17
Exon sequences
Seq C1 exon
TCAGCGGCGAGAGCCCAGCGCAGTGTCGATGGGAATACTTGTCGCTGCTGGTGCTGATGCTGAGCGGCTGCTCAGGCCGTATCCACCGGCTGACTCTCACA
Seq A exon
GTGAGCCCCGCAGGCTTGGCCTCGCTGTCTCCCCCCCCCTTAGCTCCGCCGGTGAATGGAGCAGCCGCACCTCCCACTGCAGGCTGCTAGTGGTCTCGTCCTGGGGTCCCCCCGCCGGGTTCTGGTAATGGGTTGGCCTGGTTTAGGGGGGGCGGGGCTTCATCTCCCAGGACCCCTGACTCCTGGCGAATTTAATTTCAGGGGGACCCTCG
Seq C2 exon
GGGGAGAAGCGAGCTGACATCCAACTGAACAGCTTTGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGACTCAGCCTCCAGGAGACAGAAGACAAGTTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128-1-1,2-1,3-1,4-1,5-1,6-1-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCCAGCGCAGTGT
R:
TTTGGAAACTTGTCTTCTGTCTCCT
Band lengths:
212-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]