RnoALTD0013255-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145047070-145049200:-
Coord C1 exon
chr7:145049100-145049200
Coord A exon
NA
Coord C2 exon
chr7:145047070-145047114
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AACCATGCTTTTCCCTCTAGCAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
CACAGGAAGTGCGGCCCCACCCTGGCATCAGGCCGGAAGTGGGCGTTGCCGGGGCCTGGCTGTGAGGCGAAGTCGGCGGTGGGGAGAGCTTCTGGACTGAG
Seq A exon
NA
Seq C2 exon
CACTTGAACAGGACTCCTTTGCCATCAGCATGGAAGACACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGGCCGGAAGTGG
R:
TGTAAGTGTCTTCCATGCTGATG
Band lengths:
122-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]