RnoALTD0013379-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58022339-58023987:+
Coord C1 exon
chr3:58022339-58022439
Coord A exon
chr3:58022440-58022711
Coord C2 exon
chr3:58023883-58023987
Length
272 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
CCTTTCAAAACCTCTTGTAGGGT
3' ss Score
6.79
Exon sequences
Seq C1 exon
CGGGGGAAATGCGTAAGTCATTGTGGTCACTTCCGGCCCGGGAGCGCGCGGGTTGATTTGTCCTTCCTCAGCCGCGGGCGCTCAGAGCTCGGAAATGGCGG
Seq A exon
GTAAGTTCCCGGGAAAAGTTTAGCAAGGGGAGGAGGCGGGTGGTTCTGGGGAAGAACGTTGAGGCGGCGGTGACAGTGGCCGCCTGGAACTTTCGAGCTCTAGCCGAGGTTCCAGAAGGCCGCTCCTTTCCGCGAAGCACTGAGGGTCGGAGGCTGGCTCCCGGTGGGCCGCGCTCAGCGCCTTCGCCCCCAGTCCACACGCTCGGCGCCTCCCATGGGCCCCCGGGCCTTGAGCTCGAGGCAGAGCGTGCAATTTCGACTTGTGGAGCGAG
Seq C2 exon
GGTTTGGTGCAATGGAGAAATTTCTAGTGGAATATAAGAGTGCGGTGGAGAAGAAACTGGCTGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF103944=Hat1_N=PU(7.4=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGAAATGCGTAAGTCAT
R:
CCAGTTTCAGCTCGATTGCT
Band lengths:
206-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]