RnoALTD0013814-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000036839 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:RGD Symbol;Acc:69234]
Coordinates
chr7:144867947-144868744:+
Coord C1 exon
chr7:144867947-144867967
Coord A exon
chr7:144867968-144868069
Coord C2 exon
chr7:144868610-144868744
Length
102 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
AAGCAATTTTGGAGGTGGTGGAA
3' ss Score
-24.16
Exon sequences
Seq C1 exon
GAAGCAGAGGCTATGGAAGTG
Seq A exon
GTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTG
Seq C2 exon
GAAGCTACAATGATTTTGGCAATTACAACAACCAGTCATCAAATTTTGGACCGATGAAAGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036839-17-19,19-19,21-19-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.859
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF116273=HnRNPA1=PD(94.4=73.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]