RnoALTD0014834-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008346 | Itgb6
Description
integrin beta 6 [Source:RGD Symbol;Acc:1303119]
Coordinates
chr3:46726700-46728054:-
Coord C1 exon
chr3:46727315-46728054
Coord A exon
NA
Coord C2 exon
chr3:46726700-46726775
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTTTTAATCTGTCTGCACAGTGA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATACAAATAAATGATTCCTATGTGCCAAGCCGGGAGCTGGGAGGCTTTCCTTTCCTTTCCTTTCCTTTTTTTTTTTTTTTTTTTAACCTTGCTTTTAGTAATCATTTGTTTGCTTTGCGATCTTGGTACTTGAAGAGGCGCGCAGGACCTTCTGTGTGTCCAGCGAATGCTCTCTGTCGTCACCGCCCTGGAAGAATGCTCTAGAGACAGATTCAGAATCTTGGCTGCGATTGTTTCTCCCTGCATTGTTTCTGTTGTTACGCTGAGGCTTTCTTTCCATCCAGTTGATCTCCATATACAGTGCTTTTTAATGCACTTTTAAAAAAATAAGAATTCTGGGCGTGTGAAAAAAATACCTCTTATATAATTTGAAAGATAAGAAAACAGTGTTTGGTTCTCCTTTGCCTAACTTCTAATTTGACTGTAAAATAATGTTTTTATTTTCCAGAGCTCGTTTGAATTCTCTGCAGAGGCTCTAACATGAAAACCAAAAATTTCAG
Seq A exon
NA
Seq C2 exon
TGAAAACTGAACCGAATGGGGATTGAGCTGGTCTGCCTGTTCCTGCTACTTCTAGGAAGGAATGATCACGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008346-3-1,4-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTGGAAGAATGCTCTAG
R:
GACCAGCTCAATCCCCATTCG
Band lengths:
350-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]