RnoALTD0014939-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014066 | Jade1
Description
jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]
Coordinates
chr2:128461229-128479241:+
Coord C1 exon
chr2:128461229-128461329
Coord A exon
chr2:128461330-128461679
Coord C2 exon
chr2:128479164-128479241
Length
350 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GCTGTCTCATTGCTTTGCAGGCT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGGCGACAGCAGGGGCTCGCCCGGCTCCCCGCGCGGCCTCTGTGGCCCGGACTCATGCGGCGCAGCGTGCAGCCCGCGGAGGCCCAGCCCGTGCGCAGCAG
Seq A exon
GTACGCGGGGGCGGAGGCGCGGGGGCGCGCGGGTCGGGGTGCGCGTCTCAGGCCGCGGCCGCGGCGGCTGCAGGACGAGCCGAGAGACTCAGCCATATTTGATGGTTTTGTTGCTTCGCTCGGGAGTTCTCGGGAGTAATGTAATGCCGAAGGTCGCTGCCTAGTGGAAATAATATAGTACGTCATTAATATGGCGCCAAAAGATTGGGCTGTGGATCTGTAGCGCGGAGGGAGGAGGCGGCCGCCCGCGCCGAGGCACTATCCCACCAGCAACTTGGGCATCGCCGGGTGGGGGCCGGCGACGAGGCCGGGATGGCCGCGGAGCCCGGGAATTGATCGGTGTCGGATCA
Seq C2 exon
GCTGTCTGCTGTCTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014066-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]