RnoALTD0014944-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000039837 | Jade3
Description
jade family PHD finger 3 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:1939377-1942198:-
Coord C1 exon
chrX:1942125-1942198
Coord A exon
chrX:1942121-1942124
Coord C2 exon
chrX:1939377-1939567
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACA
5' ss Score
6.25
3' ss Seq
GTTTTCTATTGCTTCTCTAGGAT
3' ss Score
10.52
Exon sequences
Seq C1 exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACC
Seq A exon
GTAG
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATTCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCTAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGACATCTTCTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039837-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(15.8=100)
A:
NA
C2:
PF105134=EPL1=FE(46.0=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTCCCTGCCAGTAACT
R:
TGGGCTGGAGCAACGGATATA
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]