RnoALTD0015190-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56781254-56781621:-
Coord C1 exon
chr4:56781539-56781621
Coord A exon
NA
Coord C2 exon
chr4:56781254-56781347
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAGGACATTGTCCATTGTAGAGG
3' ss Score
4.14
Exon sequences
Seq C1 exon
GCTGTGAGTACGAGGGGCAGCTTCACCAGGAAGGGACCAGCTTCCTGTCCACTTCCAACCCATGCCTCCAGTGTTCTTGCCTG
Seq A exon
NA
Seq C2 exon
AGGAGCCTGGTTCGGTGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCCCAACCCAGTCCTGAGACCTGGACACTGCTGCCCAGTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-9-7,10-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=92.9)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACGAGGGGCAGCTTCA
R:
CAGACTGGGCAGCAGTGTC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]