RnoALTD0015945-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000055608 | LOC102548695
Description
zinc finger protein 45-like [Source:RGD Symbol;Acc:7529325]
Coordinates
chr1:81161994-81163557:-
Coord C1 exon
chr1:81163436-81163557
Coord A exon
NA
Coord C2 exon
chr1:81161994-81162089
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTAAAATATGTTCTTCGCAGGGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
GAGACGGTGACGTTGAAGGACATGACTGTGGTCTTCAGCGAGGAAGAACTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTGACGTGATGCTGGAGAGCCTGAGGAATGTGGCATCCCTGG
Seq A exon
NA
Seq C2 exon
GGCATCGGATCGGGACTCCAGATGGTTTGCTCAGGCTCAAGAGAGAAGACATGTTTTGGCTGTTGACAGTGGCTCGCTGGAGCAGTGGGTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055608-2-2,3-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCGAGGAAGAACTGGG
R:
CCAGCGAGCCACTGTCAAC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]