RnoALTD0016000-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006112 | LOC102554315
Description
zinc finger protein 596-like [Source:RGD Symbol;Acc:7747897]
Coordinates
chr3:145639155-145641334:-
Coord C1 exon
chr3:145641274-145641334
Coord A exon
chr3:145641191-145641273
Coord C2 exon
chr3:145639155-145640199
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
TATGCCAATTATGTTTGCAGGCA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GCTACATTTGGAAAGACCATAACACTGAAGGACATTTTCTAAGTTCTGGAAGAGATGGAAG
Seq A exon
GTAATTTTCAAGTGCAAGCTGATAAGAATATGCCTCTGGAGAAATTTTAGTATGTCCTGCAAGTTTTAAAGAAAAGCAACAGG
Seq C2 exon
GCACGAAAGAAGTTATACTGAAGAGAAACTTTCTGAATTTACGCAGTATGATAAAGACTTTGCATATCAGAGTCATCCTCAAAGACATGAAAGAATTCATTCTGGAGAGAAACCTTATGAAGGTATCCAATATTTTGAAGCCTTTGCACATCACAGTAGTCTCCAAATACATAAAAGAACACATATTGTAGACAAACCCTATGAGTGTAACCAATGTGGTAAAACCTTTGCATATCACAGTTATCTTCAAAGGCATGAGAGAAGTCATACAGGAGAGAAACCTTATCAATGTAATCAATGCGGCAAAGCCTTCGGACGCCACAGTCATCTTCAGAGGCATGAAAGAATTCACACAGGAGAAAAAAGCTATGACTGTAATCAATGTGGTAAAACATTTGTGCATCACAGTCATCTTCAAATACATAAAAGGACACATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCTCGAAACAGTCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006112-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAGTTCTGGAAGAGATGGAAG
R:
ACTGTGATGTGCAAAGGCTTCA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]