RnoALTD0016028-1/8 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000020774 | LOC103690163
Description
zinc finger protein 420 [Source:RGD Symbol;Acc:9421075]
Coordinates
chr1:87790330-87792314:+
Coord C1 exon
chr1:87790330-87790430
Coord A exon
NA
Coord C2 exon
chr1:87792250-87792314
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CACGACTCTTTGTTCCCCAGCTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
TTCCCATCGCAGACTACATTTCCCAGAAGCGCCCGCAATTTCTAGGCAGCCCCTTCTTTTGCCTGCGGGACCCTCATCGTCCGGGGACAGGAAAGTGTACG
Seq A exon
NA
Seq C2 exon
CTCTGCCCCTCCAGAGGTACCCAGTGGAGAGAGGAGGAATGGCTGCGGACCATGCCAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020774-0-0,1-0,2-0,3-0,4-0,5-0,6-0,7-0-1/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTTCTAGGCAGCCCCTT
R:
CAGCCATTCCTCCTCTCTCCA
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]