RnoALTD0016079-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000058436 | LOC108348215
Description
zinc finger protein 420-like [Source:RGD Symbol;Acc:11371780]
Coordinates
chr1:61504143-61509765:+
Coord C1 exon
chr1:61504143-61504269
Coord A exon
NA
Coord C2 exon
chr1:61506959-61509765
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
AGAATTGTACTAATTTTCAGAGA
3' ss Score
4.69
Exon sequences
Seq C1 exon
GGTCTGTTGACATTCAGGGATGTGGCTGTGAACTTCTCTCAGGAGGAGTGGGAATACCTGAACTCTGCTCAGAGGGCTTTATACATTGATGTGATGTTGGAGAATTACAGCAACCTGGTCTCTGTTG
Seq A exon
NA
Seq C2 exon
AGAACTACTGCATATGTGAAACTGTCCTTCCAACTGTGAAGACTGAAAAGGACTCTTGTCAGGGTAATGAGCTTGGCGAAATGCTTCGTGGTCCCTCCAATTGTGTACTTTATAAAAGAAGTGACACTACAGAAACCTCTAATAACTACAGATACTGTAAGGACAGGGATGCCTCTGTTGACTCATCAAACCCAGATCAACATACAAGCACGCACACTGGAGAAGAACCTTGCGCATCTAAAAACTGTGAGAAATCTTTCAGTTTGTGTTCCAACATTAGGGAAGATCAAAGACTCTACACTGCAAAGAAAGAGTACAAGCAGGATGAATATGATGACCGTTTCAGCTCTACATATAGTCTCATGCAACAGACAGTTAACATGGGAGAGAAACCATATCAGTGTGGACACTGCAGGAGATACTTCAGTACTGCCTCAAGCTTTAGCATACATAAGAGAATTCATACTGGAGAGAAACCTTACAAGTGCAATGTTTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058436-10-9,11-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGTGGCTGTGAACTTCT
R:
ACAGTTGGAAGGACAGTTTCACA
Band lengths:
148-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]