RnoALTD0016161-4/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022555 | LOC497899
Description
similar to hypothetical protein 4930503F14 [Source:RGD Symbol;Acc:1561674]
Coordinates
chr10:36710535-36711602:-
Coord C1 exon
chr10:36711505-36711602
Coord A exon
chr10:36711479-36711504
Coord C2 exon
chr10:36710535-36710622
Length
26 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGA
5' ss Score
3.54
3' ss Seq
CATTGTTCATTTCTGAACAGACA
3' ss Score
6.84
Exon sequences
Seq C1 exon
AATTACATGATATGAGTGCCTGACTCCTGGGTATAACCCCAGCAACTGGGAGATCAAGACAGGAAGGGCAGAAGTTGATGGTCATCTCTGTCTACAGA
Seq A exon
GTGGGTTACAGGATAGCCTGGGTTAT
Seq C2 exon
ACAGAAGCAAACCAAGGCGAAAGTTTGAGAAACACTGAAGGATCCAATGTGGGACGGAGTAGGAAGCGGGCAGGACAAAGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022555-5-1,6-1,7-1,8-1,9-1,10-1-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCAAGACAGGAAGGGC
R:
CCTACTCCGTCCCACATTGGA
Band lengths:
113-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]