RnoALTD0016225-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000042308 | LOC680200
Description
similar to zinc finger protein 455 [Source:RGD Symbol;Acc:1594231]
Coordinates
chr1:37811615-37818957:-
Coord C1 exon
chr1:37818857-37818957
Coord A exon
chr1:37818760-37818856
Coord C2 exon
chr1:37811615-37811741
Length
97 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
3' ss Seq
TTCATTGGTCTTTATTTCAGGAA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GAGTTAGGCTCCAGGATTTCCTTCGCACTGACTTCTGGGAGATGTAGTCTGCACCACTGTGACCACAGGGAGTCTTCCGGGAAATCCTATTCTGACTTCAG
Seq A exon
GTGTCTACTTGTGGGTCTTTCTCAAAGTTGGGCGGAAAGCGTGTGCGGCTGTACATTCCTGTTGTCCGGTACTTGGAGGTTGGTCTGGGACTTGGAG
Seq C2 exon
GAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAGTGCCTGGAGCCTGTTCAGTGGAATCTATACAGGGACGTGATGTTGGAGAATTACAGCAACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042308-1-1,2-1,3-1,4-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCACTGACTTCTGGGAGA
R:
TCTCCAACATCACGTCCCTGT
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]