RnoALTD0016335-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005678 | Lamb1
Description
laminin subunit beta 1 [Source:RGD Symbol;Acc:1306311]
Coordinates
chr6:50528800-50529157:+
Coord C1 exon
chr6:50528800-50528900
Coord A exon
chr6:50528901-50528914
Coord C2 exon
chr6:50529036-50529157
Length
14 bp
Sequences
Splice sites
5' ss Seq
AAAGTACTT
5' ss Score
1.73
3' ss Seq
TCCCCCCTCTACCTCTCCAGAAA
3' ss Score
10.19
Exon sequences
Seq C1 exon
AGCAGAGACGCCTCCCTCGGTTCCTCCCTAGGCGAAACTTTCTAATTCCCTTCTTTGGGCCGGTGGGCTGCCAGGAGCCACTAGAACGCTCGCCCAGCCGG
Seq A exon
GTGAGGAGAACAAA
Seq C2 exon
AAAGGAAGACACGAAGAAAAGACGGGCAGCTTGCCTGCCGCGTCCTCCTTCCCGTGCCGCGTCCCCTCGCCTGCAAGGACTGGACATGGGGGTGCTCCAGGTGTTCGCCTTTGGTGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005678-2-0,3-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTAGGCGAAACTTTCT
R:
GCCCGTCTTTTCTTCGTGTCT
Band lengths:
107-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]