RnoALTD0016338-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117268340-117268615:+
Coord C1 exon
chr8:117268340-117268440
Coord A exon
chr8:117268441-117268446
Coord C2 exon
chr8:117268530-117268615
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGC
5' ss Score
3.64
3' ss Seq
TCTATTTTACTTCTCTTCAGGAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTCAAAGTCGTCAGAGTCTCTCAGATTGTGGAGGAGTGACTGCTGGTCGGACCCTGGGACAGACTGAGGGCCTGGAGGGAAACCAGCCCAGTACCCACACG
Seq A exon
GTCAGG
Seq C2 exon
GATGGAGTGGGCCTCAGGAAAACCAGGGAGGGGCAGGCAGGGACAGCCTGTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.483
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGAGGAGTGACTGCTGG
R:
TTTTCCTGAGGCCCACTCCAT
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]