RnoALTD0016358-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70574710-70575463:-
Coord C1 exon
chr13:70575314-70575463
Coord A exon
NA
Coord C2 exon
chr13:70574710-70574824
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAATCTTGTTCTATTTACAGACT
3' ss Score
7.48
Exon sequences
Seq C1 exon
GCAGAGGCAAAGAGGATCAGGCAGAAGGCTGATTCCCTCTCCAACTTGGTGACCAAACAAATGGATGCATTCACGAGTGTGCGAAACAATCTGGGGAACTGGGAAAAAGAAACACGGCAGCTCTTGCAGACTGGGAAGGACAGAAGACAG
Seq A exon
NA
Seq C2 exon
ACTTCGGATCAGCTGCTTTCCCGTGCCAACCTTGCTAAAAGCAGAGCCCAAGAAGCGCTAAGTATGGGCAATGCCACTTTTTATGAAGTTGAGAACATCCTAAAGAACCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667-28-20,29-20-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCAAAGAGGATCAGGCA
R:
TCTGAGGTTCTTTAGGATGTTCTCA
Band lengths:
262-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]