RnoALTD0017600-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007084 | March10
Description
membrane associated ring-CH-type finger 10 [Source:RGD Symbol;Acc:1311692]
Coordinates
chr10:93594788-93602204:-
Coord C1 exon
chr10:93602091-93602204
Coord A exon
chr10:93601933-93602090
Coord C2 exon
chr10:93594788-93594830
Length
158 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
CATTGTCTTCTCTCTCATAGATG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GCACAGAGTGAGCTGATGAACTCAGGCTTGTACCTGGTGCTGCTGCTCCACCTGTATGAGCAGAGGTTCGCAGAACTCATGACCCTCAACTACAGGCGGGCTTCCAGAGAGAGG
Seq A exon
GTAAGTCCAGCTCTGGGAGGAGCATGGCGCGCAGCCGCGGACACCACGTGATGCCTAAGTCACGTGACTCCTTAGTGTCAAAGGCAAACAGTGATTAAGTGGTCGTCAGTGGAATTGTGAGTGAAGGAGTCTCTAGAGCGACCTGCCCCGAAACAGAG
Seq C2 exon
ATGTCAAGAAATTACCCACAACCCAGACCGGAAGAAAGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007084-38-45,39-45-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGTGAGCTGATGAACT
R:
TTTCGCTTTCTTCCGGTCTGG
Band lengths:
157-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]