RnoALTD0018376-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016695 | Mmp2
Description
matrix metallopeptidase 2 [Source:RGD Symbol;Acc:621316]
Coordinates
chr19:15564074-15565236:-
Coord C1 exon
chr19:15565170-15565236
Coord A exon
chr19:15565088-15565169
Coord C2 exon
chr19:15564074-15564202
Length
82 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGC
5' ss Score
5.3
3' ss Seq
AGAGTCAATGTGGGTTTCAGAGC
3' ss Score
3.27
Exon sequences
Seq C1 exon
GATCATTGGTTACACACCTGACCTGGACCCTGAGACAGTGGATGATGCCTTTGCTCGGGCCTTAAAA
Seq A exon
GTATGGAGCGACGTAACTCCACTACGCTTTTCTCGAATCCATGATGGGGAAGCTGACATCATGATCAACTTTGGTCGATGGG
Seq C2 exon
AGCATGGAGATGGATACCCATTTGACGGCAAGGACGGACTCCTGGCACATGCCTTTGCCCCGGGCACTGGTGTTGGGGGAGATTCTCACTTTGATGACGATGAGCTGTGGACTCTAGGAGAAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016695-3-5,4-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
NA
C2:
PF0041319=Peptidase_M10=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACACACCTGACCTGGACCC
R:
AGAGTCCACAGCTCATCGTCA
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]