RnoALTD0018801-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116856628-116858555:+
Coord C1 exon
chr8:116856628-116856728
Coord A exon
chr8:116856729-116856777
Coord C2 exon
chr8:116858408-116858555
Length
49 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACA
5' ss Score
6.72
3' ss Seq
TTTCCATGCCCATCTCACAGGGC
3' ss Score
8.94
Exon sequences
Seq C1 exon
ACCGCGTGCCCGCTCGCGCGCCGCTCCAGCCGCGCACGCGCATATGCACAGACCGCAACAGGCCCTTGCTGGCAAAAAACCCTCCCCCGACTCCTACCCAG
Seq A exon
GTGTTTACCTGTTTTACCTGATGGTCCAACGGCCTTTCCTAGCCCAACG
Seq C2 exon
GGCAGCGCTCACCGCTGAATGACTTCCAGCTGCTTCGGGGCACAGAGTTAAGGAACCTGCTACATCCAGTGGTGCCAGGGCCATGGCAGGAGGATGTGGCAGATGCCGAGGAGTGTGCTAGACGCTGTGGGCCCCTTCTGGACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-0-2,1-2,2-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002421=PAN_1=FE(52.1=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCACAGACCGCAACAGG
R:
CCACTGGATGTAGCAGGTTCC
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]