RnoALTD0018802-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859237-116859632:+
Coord C1 exon
chr8:116859237-116859357
Coord A exon
NA
Coord C2 exon
chr8:116859445-116859632
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
AGTCTTGTTACTGCTCCCAGGTT
3' ss Score
4.89
Exon sequences
Seq C1 exon
CGGTTTGTGTTTGGTGCAACGGCGAGGATTACCGTGGCGAGGTAGACGTTACAGAATCGGGACGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCACCCTGAAAA
Seq A exon
NA
Seq C2 exon
GTTCCCAGACAAAGCTCTGAAAGACAACTATTGCCGTAATCCGGATGCATCTGAGCGGCCCTGGTGCTACACCACGGACCCGAATGTTGAGCGAGAGTTCTGTGACCTGCCCAGTTGCGGTATGCTGCAGGGACAGGGCCTCGGAGGGAACTTGGAAAAAACTGGCAGGCGTGGTTCAACTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-10-7,11-7,12-7-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
NA
C2:
PF0005113=Kringle=PD(50.0=60.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCTTTCCACCCTGAAAA
R:
ACATTCGGGTCCGTGGTGTAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]