RnoALTD0018804-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859740-116860188:+
Coord C1 exon
chr8:116859740-116859908
Coord A exon
chr8:116859909-116859913
Coord C2 exon
chr8:116860058-116860188
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
Exon sequences
Seq C1 exon
GATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
Seq A exon
GTGAG
Seq C2 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-15-10,16-10,17-10-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTGTGCCGGAGAAATA
R:
CAGGTCGAGATGTGAAGCACC
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]