RnoALTD0019058-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55275008-55283675:+
Coord C1 exon
chr10:55275008-55275108
Coord A exon
chr10:55275109-55275227
Coord C2 exon
chr10:55283300-55283675
Length
119 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
ATTCTGCCTTTCTCTTCCAGAGG
3' ss Score
10.94
Exon sequences
Seq C1 exon
ACAGAGAGACGTGACCAGTGGGAGCTGGTGGCTTCTGCTGCGGCACACCTGCCCCACTGTCCACCCAGCCCTGACTAGCGCAGCGCGTACACCCCAACAAG
Seq A exon
GTCGGCGCCCTCTGCCTCGCGGGATCGCCCGGCTCCCAGTTTCAGCTGTCCATCTCCCTCCCGAGCCAGCCAATCACCTGCCATTGCCCGGGCCGCACCTCCCGGAATTTTTGACAGGC
Seq C2 exon
AGGCAATAACTTTTGGGTCCTTCTGTTTACAATGGCCCAGAGAACTGGACTGGAGGATCCCGAGAGGTATCTCTTTGTGGACAGGGCTGTCATCTACAACCCTGCCACTCAAGCTGACTGGACAGCTAAAAAGCTGGTGTGGATTCCATCTGAACGCCATGGTTTTGAGGCAGCTAGTATTAAAGAAGAACGGGGCGATGAGGTTATGGTGGAGCTGGCAGAGAACGGGAAGAAAGCGATGGTCAACAAAGATGACATTCAGAAGATGAACCCGCCGAAGTTCTCCAAGGTGGAGGACATGGCAGAGCTCACGTGCTTGAACGAAGCCTCTGTTTTACACAATCTGAAGGATCGCTACTATTCAGGACTCATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=WD(100=37.4),PF0006316=Myosin_head=PU(4.1=24.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGTGACCAGTGGGAG
R:
GGCGTTCAGATGGAATCCACA
Band lengths:
256-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]