RnoALTD0019104-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151129160-151129603:+
Coord C1 exon
chr3:151129160-151129316
Coord A exon
NA
Coord C2 exon
chr3:151129576-151129603
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
ACTCTCTTTCCTTTCTCTAGACA
3' ss Score
10.06
Exon sequences
Seq C1 exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTACTGTGGTGGCCGCCTACAAGGGCAAGCGCCGCTCGGAGGCCCCGCCTCATATATATGCAGTGGCAGATAATGCCTACAATGACATGCTCCGCA
Seq A exon
NA
Seq C2 exon
ACAGAGAGAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGGCTCCCGGTCTACAC
R:
AGCATGGACTGGTTCTCTCTGT
Band lengths:
141-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]