RnoALTD0019623-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000854 | Ncr3
Description
natural cytotoxicity triggering receptor 3 [Source:RGD Symbol;Acc:727881]
Coordinates
chr20:5170141-5175313:+
Coord C1 exon
chr20:5170141-5170241
Coord A exon
chr20:5170242-5170560
Coord C2 exon
chr20:5174969-5175313
Length
319 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
GATATTTGCTTTCTCCCCAGGAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
TGAGCATGACCGAACAAAGGAAAGGGGAAGGAGCCCAGTCTCTCAGCTGGAGGGTGTTGGAGGTTTGTTCTGGGCAAAGGCCTGGTCTTGAACCTCAGAAG
Seq A exon
GTGAGAGAACCACATCCTCGTCTCACCTACCCAATCTTGTAAAATCGGACACGAGGACATCCTGTCCTACTATACCACCTGTCCACTGGCTGCCTCCAGAGGGTCCAGGCATGTCCATCAGGGCCATCTTTTCTCCTTAGTGGGACATGGCCCAAAGTCCCAAGCAGTGGAGGTTCTTGACAAGTCATGTGTGAGTCCTACTTGTCCTAGGCTCCGGTAGTCGATCCTCTACTTAGACCTCACCACTGAGGTCCGTCCGCTTCGCCAATGGGAGGTATGGCCAAGGTGCTGCTGGTCGTCTTCATCATGGTTTATGCAG
Seq C2 exon
GATCCTGTGCTGTCTGGGTGTCTCAGCCCCCTGAGATTCGTGCACAAGAGGGCACCACTGCCTCCCTGCCCTGTTCGTTCAATGCCAGCAGAGGGAAAGCGGCCATTGGCTCTGCCACATGGTACCAAGACAAAGTAGCCCCGGGGATGGAGTTGAGCAACGTGACCCCAGGGTTCAGGGGCCGAGTGGCCTCTTTTTCTGTTTCCCAGTTCATTAGAGGCCACAAGGCCGGGCTGCTCATACAGGACATCCAAAGCCATGACGCCAGAATCTACGTGTGCAGAGTGGAGGTGCTAGGCCTGGGCGTCGGAACAGGAAACGGGACTCGGCTGGTGGTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000854-2-1,3-1,4-1,5-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=WD(100=94.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGAAAGGGGAAGGAGCC
R:
CGTCATGGCTTTGGATGTCCT
Band lengths:
351-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]