RnoALTD0019648-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468084-2468432:-
Coord C1 exon
chr3:2468325-2468432
Coord A exon
chr3:2468276-2468324
Coord C2 exon
chr3:2468084-2468198
Length
49 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
3' ss Seq
AGCCATCACTGTGTCCATAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTGCTGTGTGACTTCCCACACACGGCGGGTGCCATTCCTCCAGACTACCTTTTGGACTTGATCCCTCGGATCCGTCCCCGGGCCTTCTCCATTGCTTCATCCCTACTG
Seq A exon
GTGAGGACTCTGAGTAGGACTGAAGGCTGGCTGGGAAAGCTGAGACTGG
Seq C2 exon
GCTCACCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGCCTGAAGGAGCCCCGCCGTGGCCTCTGCTCCTCCTGGCTAGCATCCCTGACTCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-9-17,10-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCCATTCCTCCAGACTA
R:
CTCCTTCAGGCGAGTCTGGTA
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]