RnoALTD0020283-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4350300-4350602:+
Coord C1 exon
chr20:4350300-4350369
Coord A exon
NA
Coord C2 exon
chr20:4350464-4350602
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GGCCTTGCTCTTGCCCCAAGGCA
3' ss Score
6.1
Exon sequences
Seq C1 exon
GGCGCTGAAGCCAGAGGCAGAAGTGGATGAGGACGGAGTGGTCATGTGCTCGGGCCCTGAAGAGGGCGAG
Seq A exon
NA
Seq C2 exon
GCAGAAAAAACAGCCTCAGCCTCCAGGTGCCAGCTCTGGCCACTGCGCAGCGGCTGTGAAGGGCTCCCACAGGCAGTCATGCTGACCCCTCCTCAGGAGTGTGAATCAGAACTTCCAGATTCGGACACCTGTGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442-28-38,29-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCAGAAGTGGATGAGGA
R:
AGAGCTGGCACCTGGAGG
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]