RnoALTD0020300-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2300942-2301220:-
Coord C1 exon
chr3:2301179-2301220
Coord A exon
chr3:2301175-2301178
Coord C2 exon
chr3:2300942-2301030
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
AGTGTCTCCTTTATGAAAAGGTG
3' ss Score
5.06
Exon sequences
Seq C1 exon
AGCTCCCAGGTGGAGCAAGCCGGCCTCCAGTCGTCCTCACCC
Seq A exon
GTGT
Seq C2 exon
GTGGTCACATGAGCCCTGGCCTATGGGACAGTTTGCTGGCAACTGGAGGGCCTGTCCCGGGCCCCTCTGAAGATTCCTCTAGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286-8-8,9-8,10-8-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGTCGTCCTCACCC
R:
AGAGGAATCTTCAGAGGGGCC
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]