RnoALTD0020614-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9655836-9656867:+
Coord C1 exon
chr3:9655836-9655975
Coord A exon
chr3:9655976-9656039
Coord C2 exon
chr3:9656615-9656867
Length
64 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
ATGTCGTCCCTGTGTTTTAGGAA
3' ss Score
11.63
Exon sequences
Seq C1 exon
GGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCATGCTCGGGGG
Seq A exon
GTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq C2 exon
GAAGGCCCAAACAAGACGGGGACTTCCTGTGCCCTGGACTGTGGTGCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTGGTTGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809-17-11,18-11,19-11-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTGACGTCATGACAA
R:
GAAGTCCCCGTCTTGTTTGGG
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]