RnoALTD0020615-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9656707-9659630:+
Coord C1 exon
chr3:9656707-9656782
Coord A exon
NA
Coord C2 exon
chr3:9658962-9659630
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CACACCTCTGATCTCCCTAGGCC
3' ss Score
9.98
Exon sequences
Seq C1 exon
GGTGGTTGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGG
Seq A exon
NA
Seq C2 exon
GCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCGCTGCAGGCGGGGCCTGCGCCCCAATGGCATCATTGTCATCAAAGACAACATGGCCCAGGAGGGTGTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGTGACCTCGAGGTGGTCCGCCGGATCATCCGCAGTGCAGGCCTCAGCCTCCTGGCTGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTATCACGTCTACAGTTTCGCCCTGAGATGAAACCGGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCAAGAGACACCTGCCACCCACCAATGACTCCAGTGGGAAGGGACAAGCCCCAGAGTAGGTGTGCCCTGGATTGGGGCAGTGCAGCCCTGTCACTCCAAAGCACCCTGGCGACTCCCTGCAGGGCCTACGGGAAGCTGAGTTGTCCCCACTGGACCAGCCGCCTAAGGGGAAAGACTTCACTTGGTTGCCTAGGACCTGAAGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809-21-15,22-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=FE(38.9=100)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGAAGACTTTCTGGCC
R:
TCCACATCGTCCAGGATCACA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]